1998: Mechanisms of Transcription, Vol. LXIII
Organizer: Bruce Stillman
Symposium Participants v Foreword xix Dedication xxv Promoter Recognition and Initiation Transcription Regulation by Repressosome and by RNA Polymerase Contact S. Adhya, M. Geanacopoulos, D.E.A. Lewis, S. Roy, and T. Aki 1 RNA Polymerase-DNA Interaction: Structures of Intermediate, Open, and Elongation Complexes R.H. Ebright 11 The Initiator Element: A Paradigm for Core Promoter Heterogeneity within Metazoan Protein-coding Genes S.T. Smale, A. Jain, J. Kaufmann, K.H. Emami, K. Lo, and I.P. Garraway 21 X-ray Crystallographic Studies of Eukaryotic Transcription Factors S.K. Burley 33 Transcription in Archaea S.D. Bell and S.P. Jackson 41 Polarity of Transcription on Pol II and Archaeal Promoters: Where Is the "One-way Sign" and How Is It Read? F.T.F. Tsai, O. Littlefield, P.F. Kosa, J.M. Cox, A. Schepartz, and P.B. Sigler 53 Transcriptional Regulation by DNA Structural Transitions and Single-stranded DNA-binding Proteins L.B. Rothman-Denes, X. Dai, E. Davydova, R. Carter, and K. Kazmierczak 63 The DPE, a Conserved Downstream Core Promoter Element That Is Functionally Analogous to the TATA Box T.W. Burke, P.J. Willy, A.K. Kutach, J.E.F. Butler, and J.T. Kadonaga 75 The RNA Polymerase II General Transcription Factors: Past, Present, and Future D. Reinberg,G. Orphanides, R. Ebright, S. Akoulitchev, J. Carcamo, H. Cho, P. Cortes, R. Drapkin, O. Flores, I. Ha, J.A. Inostroza, S. Kim, T.-K. Kim, P. Kumar, T. Lagrange, G. LeRoy, H. Lu, D.-M. Ma, E. Maldonado, A. Merino, F. Mermelstein, I. Olave, M. Sheldon, R. Shiekhattar, N. Stone, X. Sun, L. Weis, K. Yeung, and L. Zawel 83 Ten Years of TFIIH F. Coin and J.-M. Egly 105 Crossing the Line between RNA Polymerases: Transcription of Human snRNA Genes by RNA Polymerases II and III R.W. Henry, E. Ford, R. Mital, V. Mittal, and N. Hernandez 111 Transcription Factor IIIB: The Architecture of Its DNA Complex, and Its Roles in Initiation of Transcription by RNA Polymerase III A. Kumar, A. Grove, G.A. Kassavetis, and E.P. Geiduschek 121 Strength and Regulation without Transcription Factors: Lessons from Bacterial rRNA Promoters R.L. Gourse, T. Gaal, S.E. Aiyar, M.M. Barker, S.T. Estrem, C.A. Hirvonen, and W. Ross 131 Activation The Functional and Regulatory Roles of Sigma Factors in Transcription C.A. Gross, C. Chan, A. Dombroski, T. Gruber, M. Sharp, J. Tupy, and B. Young 141 The Bacterial Enhancer-binding Protein NtrC as a Molecular Machine I. Rombel, A. North, I. Hwang, C. Wyman, and S. Kustu 157 Gene Transcription by Recruitment Z. Zaman, A.Z. Ansari, L. Gaudreau, J. Nevado, and M. Ptashne 167 Use of Artificial Activators to Define a Role for Protein-Protein and Protein-DNA Contacts in Transcriptional Activation S.L. Dove and A. Hochschild 173 Activation and the Role of Reinitiation in the Control of Transcription by RNA Polymerase II S. Hahn 181 Cofactor Requirements for Transcriptional Activation by Sp1 A.M. När, S. Ryu, and R. Tjian 189Role of General and Gene-specific Cofactors in the Regulation of Eukaryotic Transcription R.G. Roeder 201 Functional Analysis of TFIID Components W.-C. Shen, L.M. Apone, C.-M.A. Virbasius, X.-Y. Li, M. Monsalve, and M.R. Green 219 Mechanism and Regulation of Yeast RNA Polymerase II Transcription R.D. Kornberg 229 Functional and Structural Analysis of the Subunits of Human Transcription Factor TFIID I. Davidson, C. Romier, A.-C. Lavigne, C. Birck, G. Mengus, O. Poch, and D. Moras 233 Mechanisms of Viral Activators A.J. Berk, T.G. Boyer, A.N. Kapanidis, R.H. Ebright N.N. Kobayashi, P.J. Horn, S.M. Sullivan, R. Koop, M.A. Surby, and S.J. Triezenberg 243 Cooperative Assembly of RNA Polymerase II Transcription Complexes K. Ellwood, T. Chi, W. Huang, K. Mitsouras, and M. Carey 253 RNA Polymerase
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Transcription Regulation, Initiation, and "DNA Scrunching" by T7 RNA PolymeraseG.M.T. Cheetham, D. Jeruzalmi, and T.A. Steitz 263 Structural Studies of Escherichia coli RNA Polymerase S.A. Darst, A. Polyakov, C. Richter, and G. Zhang 269 Interaction of Escherichia coli s70 with Core RNA Polymerase R.R. Burgess, T.M. Arthur, and B.C. Pietz 277 The Transition from Initiation to Elongation by RNA Polymerase II D.S. Luse and I. Samkurashvili 289 Role of RNA Polymerase II Carboxy-terminal Domain in Coordinating Transcription with RNA Processing S. McCracken, E. Rosonina, N. Fong, M. Sikes, A. Beyer, K. O'Hare, S. Shuman, and D. Bentley 301 Fractions to Functions: RNA Polymerase II Thirty Years Later N.A. Woychik 311 Elongation and Termination Antitermination by Bacteriophage l Q Protein J.W. Roberts, W. Yarnell, E. Bartlett, J. Guo, M. Marr, D.C. Ko, H. Sun, and C.W. Roberts 319 Structure and Mechanism in Transcriptional Antitermination by the Bacteriophage l N ProteinJ. Greenblatt, T.-F. Mah, P. Legault, J. Mogridge, J. Li, and L.E. Kay 327 Mechanistic Model of the Elongation Complex of Escherichia coli RNA Polymerase N. Korzheva, A. Mustaev, E. Nudler, V. Nikiforov, and A. Goldfarb 337 Promoter-associated Pausing in Promoter Architecture and Postinitiation Transcriptional Regulation J. Lis 347 Mechanism of Promoter Escape by RNA Polymerase II J.W. Conaway, A. Dvir, R.J. Moreland, Q. Yan, B.J. Elmendorf, S. Tan, and R.C. Conaway 357 RNA Polymerase II Elongation Control J. Peng, M. Liu, J. Marion, Y. Zhu, and D.H. Price 365 HIV-1 Tat Interacts with Cyclin T1 to Direct the P-TEFb CTD Kinase Complex to TAR RNA M.E. Garber, P. Wei, and K.A. Jones 371 The Yeast RNA Polymerase III Transcription Machinery: A Paradigm for Eukaryotic Gene Activation S. Chédin, M.L. Ferri, G. Peyroche, J.C. Andrau, S. Jourdain, O. Lefebvre, M. Werner, C. Carles, and A. Sentenac 381 Repression Mechanisms The Regulation of Gene Activity by Histones and the Histone Deacetylase RPD3 N. Suka, A.A. Carmen, S.E. Rundlett, and M. Grunstein 391 Targeting Sir Proteins to Sites of Action: A General Mechanism for Regulated Repression M. Cockell, M. Gotta, F. Palladino, S.G. Martin, and S.M. Gasser 401 Activation and Repression Mechanisms in Yeast K. Struhl, D. Kadosh, M. Keaveney, L. Kuras, and Z. Moqtaderi 413 The Mad Protein Family Links Transcriptional Repression to Cell Differentiation G.A. McArthur, C.D. Laherty, C. Quéva, P.J. Hurlin, L. Loo, L. James, C. Grandori P. Gallant, Y. Shiio, W.C. Hokanson, A.C. Bush, P.F. Cheng, Q.A. Lawrence, B. Pulverer, P.J. Koskinen, K.P. Foley, D.E. Ayer, and R.N. Eisenman 423 Histone Deacetylase Directs the Dominant Silencing of Transcription in Chromatin: Association with MeCP2 and the Mi-2 Chromodomain SWI/SNF ATPase P.A. Wade, P.L. Jones, D. Vermaak, G.J.C. Veenstra, A. Imhof, T. Sera, C. Tse, H. Ge, Y.-B. Shi, J.C. Hansen, and A.P. Wolffe 435 Gene Regulation by the Yeast Ssn6-Tup1 Corepressor M. Wahi, K. Komachi, and A.D. Johnson 447 In Vivo Functions of Histone Acetylation/Deacetylation in Tup1p Repression and Gcn5p Activation D.G. Edmondson, W. Zhang, A. Watson, W. Xu, J.R. Bone, Y. Yu, D. Stillman, and S.Y. Roth 459 Chromosome Structure and Transcription Signaling to Chromatin through Histone Modifications: How Clear Is the Signal? C. Mi
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